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	<title>danielbachhuber &#187; science</title>
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		<title>danielbachhuber &#187; science</title>
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		<title>Irreproducible Results</title>
		<link>http://danielbachhuber.com/2011/10/16/irreproducible-results/</link>
		<comments>http://danielbachhuber.com/2011/10/16/irreproducible-results/#comments</comments>
		<pubDate>Mon, 17 Oct 2011 05:22:53 +0000</pubDate>
		<dc:creator>Daniel Bachhuber</dc:creator>
				<category><![CDATA[quotes]]></category>
		<category><![CDATA[experimentation]]></category>
		<category><![CDATA[Kevin Kelly]]></category>
		<category><![CDATA[science]]></category>
		<category><![CDATA[scientific method]]></category>

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		<description><![CDATA[[The] problem of irreproducibility is tied to a bias in science toward positive results. This bias towards the positive operates on many levels in science, including a &#8220;publication bias&#8221; of only publishing positive results and discarding, if not dismissing, negative &#8230; <a href="http://danielbachhuber.com/2011/10/16/irreproducible-results/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=danielbachhuber.com&amp;blog=16096444&amp;post=128815&amp;subd=danielbachhuber&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<blockquote><p>[The] problem of irreproducibility is tied to a bias in science toward positive results. This bias towards the positive operates on many levels in science, including a &#8220;publication bias&#8221; of only publishing positive results and discarding, if not dismissing, negative results. The bias toward positive results including setting up experiments to capture positive results, which means that of course more positive results will be found. Or to keep experimenting until one does get positive results.</p></blockquote>
<p>Kevin Kelly &mdash; <a href="http://www.kk.org/thetechnium/archives/2011/10/irreproducible.php">Irreproducible Results</a></p>
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		<title>Annotum</title>
		<link>http://danielbachhuber.com/2011/06/16/annotum/</link>
		<comments>http://danielbachhuber.com/2011/06/16/annotum/#comments</comments>
		<pubDate>Thu, 16 Jun 2011 20:36:19 +0000</pubDate>
		<dc:creator>Daniel Bachhuber</dc:creator>
				<category><![CDATA[asides]]></category>
		<category><![CDATA[education]]></category>
		<category><![CDATA[higher education]]></category>
		<category><![CDATA[publishing]]></category>
		<category><![CDATA[research]]></category>
		<category><![CDATA[science]]></category>
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		<description><![CDATA[Annotum. Project to build an open-access scholarly authoring and publishing platform based on WordPress.<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=danielbachhuber.com&amp;blog=16096444&amp;post=128040&amp;subd=danielbachhuber&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://annotum.wordpress.com/">Annotum</a>. Project to build an open-access scholarly authoring and publishing platform based on WordPress.</p>
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		<title>Journalism should be reproducible</title>
		<link>http://danielbachhuber.com/2011/02/17/journalism-should-be-reproducible/</link>
		<comments>http://danielbachhuber.com/2011/02/17/journalism-should-be-reproducible/#comments</comments>
		<pubDate>Thu, 17 Feb 2011 18:22:35 +0000</pubDate>
		<dc:creator>Daniel Bachhuber</dc:creator>
				<category><![CDATA[posts]]></category>
		<category><![CDATA[Carnival of Journalism]]></category>
		<category><![CDATA[David Cohn]]></category>
		<category><![CDATA[journalism]]></category>
		<category><![CDATA[journalism should be reproducible]]></category>
		<category><![CDATA[science]]></category>
		<category><![CDATA[semantic web]]></category>
		<category><![CDATA[structured data]]></category>

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		<description><![CDATA[The idea came a month ago: &#8220;journalism should be reproducible.&#8221; After a conversation with Miles this weekend, I&#8217;d like to explore this further. First point: Let&#8217;s approach journalism as the science for civic participation. Give journalism the goal to help &#8230; <a href="http://danielbachhuber.com/2011/02/17/journalism-should-be-reproducible/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=danielbachhuber.com&amp;blog=16096444&amp;post=127211&amp;subd=danielbachhuber&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><!-- p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px Monaco} p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px Monaco; min-height: 14.0px} -->The idea came a month ago: &#8220;<a href="http://danielbachhuber.com/2011/01/16/status-13/">journalism should be reproducible</a>.&#8221; After a <a href="http://blog.milesskorpen.com/2011/02/15/the-business-of-data/">conversation with Miles</a> this weekend, I&#8217;d like to explore this further.</p>
<p>First point: Let&#8217;s approach journalism as the science for civic participation. Give journalism the goal to help us improve our standards of living, create a more just society, and so on. Make the goals measurable in various ways, and we can track our progress towards them.</p>
<p>Science, <a href="http://en.wikipedia.org/wiki/Science">according to Wikipedia</a>, &#8220;builds and organizes knowledge in the form of testable explanations and predictions about the world.&#8221; A report in a scientific journal has an abstract, methodology, presentation of the data, discussion and conclusion. News articles typically have the first and last. They&#8217;re missing two critical pieces: presentation of the data and the methodology used to collect the data. Reproducibility is a vital aspect of the scientific method (<a href="http://www.newyorker.com/reporting/2010/12/13/101213fa_fact_lehrer">related: Jonah Lehrer has a fascinating article on this topic in the New Yorker</a>).<span id="more-127211"></span></p>
<p>Journalism has no equivalent. As a profession in existential doldrums, we say we bring truth to power while, at the same time, <a href="http://www.salon.com/news/opinion/glenn_greenwald/2011/02/14/journalism/index.html">questioning ethics when Anderson Cooper calls out the lies of the state</a>. This is broken. Jay Rosen likes to say &#8220;here&#8217;s where I&#8217;m coming from.&#8221; It wants to include &#8220;here&#8217;s my conclusion, and here&#8217;s the data and methodology to back it up.&#8221;</p>
<p>For <a href="http://carnivalofjournalism.com/2011/02/08/were-back-at-it-carnival-of-journalism-jcarn/">this month&#8217;s Carnival of Journalism</a>, David Cohn asks: considering your unique position, what can be done to increase the number of news sources? Last month, I did a time-consuming <a href="http://danielbachhuber.com/2011/01/20/universities-as-hubs-of-journalistic-activity/">content analysis of the two Locals</a>. I think the question afforded it. This month&#8217;s question makes a false assumption: improving journalism requires a growth of news sources. Look at Google News right now:</p>
<p><a rel="attachment wp-att-127217" href="http://danielbachhuber.com/2011/02/17/journalism-should-be-reproducible/20110217googlenews/"><img class="alignnone size-full wp-image-127217" src="http://danielbachhuber.files.wordpress.com/2011/02/20110217googlenews.jpg?w=584" alt=""   /></a></p>
<p>We have a metric ton of news sources producing a metric ton of content. 2,535 stories about the Bahrain story, 1,002 stories about Iran, and 392 stories about Ben Ali&#8217;s grave condition. I&#8217;d be willing to bet there are a countable number of facts contained within all of those stories, and the actual collection of those facts took less than 5% of the total resources used.</p>
<p>Everyone can publish, but the question remains whether what they&#8217;re publishing is useful. Instead of increasing the number of news sources, we should focus on producing durable data and the equivalent tools for remixing it. Data can be the average wait time at the restaurant I&#8217;m eating at this evening, or the <a href="http://danielbachhuber.com/2010/07/17/data-driven-life/">cost and freshness of produce at the various bodegas in my neighborhood</a>. Or, if I&#8217;m searching for office space, whether the building I&#8217;m looking at actually recycles like they say they do. Functional databases make up two-thirds of the Texas Tribune&#8217;s traffic. When information is managed at the data level, it can more be easily reused in different contexts with different tools (long form Instapaper article vs. app with location-based push notifications). Expose the original data and methodology used to achieve the conclusion, and journalism can be reproducible.</p>
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		<title>Status</title>
		<link>http://danielbachhuber.com/2011/01/16/status-13/</link>
		<comments>http://danielbachhuber.com/2011/01/16/status-13/#comments</comments>
		<pubDate>Sun, 16 Jan 2011 17:55:09 +0000</pubDate>
		<dc:creator>Daniel Bachhuber</dc:creator>
				<category><![CDATA[statuses]]></category>
		<category><![CDATA[data journalism]]></category>
		<category><![CDATA[experimentation]]></category>
		<category><![CDATA[journalism]]></category>
		<category><![CDATA[science]]></category>
		<category><![CDATA[tenets of journalism]]></category>

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		<description><![CDATA[New tenet of journalism: it must be reproducible.<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=danielbachhuber.com&amp;blog=16096444&amp;post=127057&amp;subd=danielbachhuber&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>New tenet of journalism: it must be reproducible.</p>
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		<title>Sunset, Mazatlan</title>
		<link>http://danielbachhuber.com/2010/03/27/sunset-mazatlan/</link>
		<comments>http://danielbachhuber.com/2010/03/27/sunset-mazatlan/#comments</comments>
		<pubDate>Sun, 28 Mar 2010 01:35:47 +0000</pubDate>
		<dc:creator>Daniel Bachhuber</dc:creator>
				<category><![CDATA[posts]]></category>
		<category><![CDATA[books]]></category>
		<category><![CDATA[genetic engineering]]></category>
		<category><![CDATA[Mazatlan]]></category>
		<category><![CDATA[science]]></category>
		<category><![CDATA[Stewart Brand]]></category>
		<category><![CDATA[travel]]></category>

		<guid isPermaLink="false">http://www.danielbachhuber.com/?p=4046</guid>
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			<content:encoded><![CDATA[<p><img src="http://danielbachhuber.files.wordpress.com/2010/03/l_1600_1200_C53200D3-D45F-4BC7-8CA8-9CEE488B37A1.jpeg?w=584" alt="" class="alignnone size-full" px" /></p>
<p>A few days on the beach was exactly what I needed to finish up decompressing. In addition to a few long, hot, and dehydrating runs, I had the chance to get a bit of reading in. The best part is that it has significantly renewed my interests in science and engineering.</p>
<p>Steward Brand on the fear of genetic engineering and genetically modified organisms, from <em>Whole Earth Discipline</em>:</p>
<blockquote><p>What &#8220;nature&#8221; are we talking about, exactly? You <em>can&#8217;t</em> do anything against nature, if your idea of nature includes physics, chemistry, and mechanics. Abominations can be imagined but cannot be performed. Anything you can do you can only do because nature allows it. Nuclear fission is so natural it occurs geogically. Horizontal gene flow is so natural it is the norm among microbes. Apparently what people mean when they say &#8220;against Nature&#8221; is &#8220;against my understanding of Darwinian inheritance and traditional breedline agriculture.&#8221; Or maybe it&#8217;s not so cosmic, and what people mean by &#8220;against Nature&#8221; is &#8220;something I&#8217;m not used to yet.&#8221;</p></blockquote>
<p>We&#8217;ve always been engineering our agriculture, and microbes swap genes continuously. If we permit, encourage and respect engineered pharmaceuticals on the open market, why not nutritionally improved food?</p>
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		<title>Covering Science and Technology: So you want to be a tech writer?</title>
		<link>http://danielbachhuber.com/2009/10/24/covering-science-and-technology-so-you-want-to-be-a-tech-writer/</link>
		<comments>http://danielbachhuber.com/2009/10/24/covering-science-and-technology-so-you-want-to-be-a-tech-writer/#comments</comments>
		<pubDate>Sat, 24 Oct 2009 23:52:32 +0000</pubDate>
		<dc:creator>Daniel Bachhuber</dc:creator>
				<category><![CDATA[posts]]></category>
		<category><![CDATA[conferences]]></category>
		<category><![CDATA[David Wolman]]></category>
		<category><![CDATA[delicious]]></category>
		<category><![CDATA[editorial workflow]]></category>
		<category><![CDATA[Eugene]]></category>
		<category><![CDATA[journalism]]></category>
		<category><![CDATA[Marshall Kirkpatrick]]></category>
		<category><![CDATA[ReadWriteWeb]]></category>
		<category><![CDATA[reporting]]></category>
		<category><![CDATA[research strategy]]></category>
		<category><![CDATA[science]]></category>
		<category><![CDATA[SPJOR09]]></category>
		<category><![CDATA[technology]]></category>
		<category><![CDATA[University of Oregon]]></category>

		<guid isPermaLink="false">http://www.danielbachhuber.com/?p=1615</guid>
		<description><![CDATA[David Wolman and Marshall Kirkpatrick (@marshallk) led the conversation for the last panel this afternoon. Informational interviews are a key part of finding stories, David says. He consumes a lot of coffee, talks with people about what they&#8217;re working on, &#8230; <a href="http://danielbachhuber.com/2009/10/24/covering-science-and-technology-so-you-want-to-be-a-tech-writer/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=danielbachhuber.com&amp;blog=16096444&amp;post=1615&amp;subd=danielbachhuber&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.david-wolman.com/">David Wolman</a> and <a href="http://marshallk.com/">Marshall Kirkpatrick</a> (@<a href="http://twitter.com/marshallk">marshallk</a>) led the conversation for the last panel this afternoon.</p>
<p>Informational interviews are a key part of finding stories, David says. He consumes a lot of coffee, talks with people about what they&#8217;re working on, and then <a href="http://twitter.com/SuziSteffen/status/5133186842">also asks about what else they&#8217;re working on</a>. That secondary information can lead to interesting pieces down the road.</p>
<p>Marshall has a detailed workflow for tracking down stories in the tech sector. He&#8217;s been working for <a href="http://www.readwriteweb.com/">ReadWriteWeb</a> for the last year and a half, and is responsible for two to three posts a day. Most of the time, stories are &#8220;interrupt-driven&#8221; or dependent on the news of the day. The whole staff logs into a single <a href="http://feedafever.com/">Fever</a> account to share RSS reading responsibilities.</p>
<p>One source of feeds is pretty ingenious. A research assistant dug up people who first linked popular web services such as Twitter, Facebook, etc. on Delicious. He did so for a number of startups over the last couple of years and put all of that information on a spreadsheet. Based on this aggregate information, he was able to identify 15 or so people who regularly link upcoming web services before anyone else. Subscribing to these Delicious accounts has multiple stories a week about hot new startups.</p>
<p>Most of the ReadWriteWeb writers use <a href="http://www.tweetdeck.com/">Tweetdeck</a> for Twitter. Marshall has the <a href="http://twitter.com/marshallk/following">4,000+ people he&#8217;s following</a> organized into different categories, including NY Times, analysts, augmented reality, etc. The team has a <a href="http://twitter.com/andrewspittle/status/5133645221">Skype chat they keep open 24 hours for coordinating on stories</a>. They use hashtags within the conversation to enable people to find information of a specific type (i.e. which stories need editing with #edit).</p>
<p>For tracking reactions to pieces he&#8217;s written, Marshall searches for conversations based on a specific URL with <a href="http://friendfeed.com/">Friendfeed</a>, <a href="http://digg.com/search?s=readwriteweb.com">based on the ReadWriteWeb domain in Digg</a>, and <a href="http://favstar.fm/users/marshallk/recent">recently favorited tweets</a>.</p>
<p>Libby Tucker <a href="http://twitter.com/SuziSteffen/status/5133843768">notes that the differences between David and Marshall&#8217;s reporting styles</a>. David flies to Urbana, Illinois to interview a scientist, whereas Marshall notes that <a href="http://twitter.com/danielbachhuber/status/5133852150">if he has to put his pants on, it&#8217;s a big day</a>.</p>
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